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Enzyme:CYP2C19: Difference between revisions

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Pharmacogenomics entity page: CYP2C19. Three CPIC Level A indications (clopidogrel + PPIs + SSRIs/voriconazole). Five-phenotype classification PM/IM/NM/RM/UM driven by *2 / *3 / *17 alleles; ancestry-frequency variation called out. Clopidogrel prodrug-activation story; PPI dose-by-phenotype; SSRI QT-prolongation in PMs. 9 inline cites across 4 PMID-verified refs: Wilkinson 2005 NEJM (PMID 15917386), Lee/Luzum 2022 CPIC clopidogrel (PMID 35034351), Lima 2021 CPIC PPI (PMID 32770672), Bousman 2...
 
Consolidate enzyme entity page to canonical Pharmacopedia: sandbox location per Mark 2026-05-19. Full retrofitted version: history-first spine, collapsible-sortable substrate table, comprehensive-tables pointer, all PMIDs NCBI-eutils-verified, zero em-dashes. For CYP2D6/CYP3A4/CYP2C19 this replaces the earlier pre-retrofit draft with the full version; for the other 8 enzymes this is the first save at the canonical location. Resolves a cross-session sandbox-location duplication: the User:MDEll...
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== Function and substrate spectrum ==
== Function and substrate spectrum ==
CYP2C19 catalyzes hydroxylation and dealkylation of an unusually focused set of substrates, in marked contrast to the catholic substrate spectrum of [[Enzyme:CYP3A4|CYP3A4]]. The substrates that matter most in current practice:
CYP2C19 catalyzes hydroxylation and dealkylation of an unusually focused set of substrates, in marked contrast to the catholic substrate spectrum of [[Enzyme:CYP3A4|CYP3A4]]. The substrate list is short but contains medicines whose narrow therapeutic indices, complex prodrug-activation pharmacology, and large population-frequency variation in CYP2C19 metabolizer phenotype have made the enzyme one of the most clinically actionable pharmacogenomic loci in routine prescribing.<ref name="zanger2013">Zanger UM, Schwab M. Cytochrome P450 enzymes in drug metabolism: regulation of gene expression, enzyme activities, and impact of genetic variation. ''Pharmacology and Therapeutics''. 2013 Apr;138(1):103-141. PMID: 23333322.</ref>


* '''[[Clopidogrel|Clopidogrel]]''' (Plavix). The antiplatelet effect of clopidogrel depends on a two-step bioactivation, the second of which is performed by CYP2C19, converting the parent compound to the thiol metabolite that covalently inactivates the platelet P2Y12 receptor. Poor metabolizers generate substantially less of the active metabolite and obtain less antiplatelet effect, which translates clinically into higher rates of stent thrombosis and major adverse cardiovascular events after percutaneous coronary intervention. CPIC recommends alternative antiplatelet therapy (prasugrel or ticagrelor) for poor and intermediate metabolizers in the post-PCI setting; the recommendation carries CPIC's strongest classification.<ref name="cpic-clopidogrel-2022">Lee CR, Luzum JA, Sangkuhl K, et al. Clinical Pharmacogenetics Implementation Consortium Guideline for CYP2C19 Genotype and Clopidogrel Therapy: 2022 Update. ''Clinical Pharmacology and Therapeutics''. 2022 Nov;112(5):959-967. PMID: 35034351.</ref> The FDA has carried a boxed warning on clopidogrel's diminished effectiveness in CYP2C19 poor metabolizers since 2010.
The table below collects the clinically important CYP2C19 substrates with each entry tagged by the contribution CYP2C19 makes to overall clearance (or to bioactivation, where the relevant medicine is a CYP2C19-activated prodrug): '''major''' (CYP2C19 is the predominant route), '''moderate''' (CYP2C19 contributes meaningfully but other routes carry comparable load), '''minor''' (CYP2C19 contributes but other pathways dominate), and '''partial''' (one of several substantial routes). The list is curated for clinical relevance and is not exhaustive; see [[#Comprehensive substrate and interaction tables|Comprehensive substrate and interaction tables]] below for the authoritative maintained resources.
* '''Proton pump inhibitors''': [[Omeprazole|omeprazole]], esomeprazole, pantoprazole, lansoprazole, dexlansoprazole are all cleared predominantly by CYP2C19 (rabeprazole less so, since it relies more heavily on a non-enzymatic pathway). Poor metabolizers reach higher plasma concentrations and have better acid suppression at standard doses, while rapid and ultrarapid metabolizers may underrespond. CPIC publishes phenotype-specific dosing guidance, recommending dose increases in rapid and ultrarapid metabolizers and consideration of dose decreases or alternative agents in poor metabolizers, especially during long-term therapy where exposure-related side effects accumulate.<ref name="cpic-ppi-2021">Lima JJ, Thomas CD, Barbarino J, et al. Clinical Pharmacogenetics Implementation Consortium (CPIC) Guideline for CYP2C19 and Proton Pump Inhibitor Dosing. ''Clinical Pharmacology and Therapeutics''. 2021 Jun;109(6):1417-1423. PMID: 32770672.</ref>
 
* '''SSRIs''': [[Citalopram|citalopram]], [[Escitalopram|escitalopram]], and to a smaller degree [[Sertraline|sertraline]] are CYP2C19 substrates. Poor metabolizers have higher exposures and a meaningfully elevated risk of QT-interval prolongation on citalopram and escitalopram; CPIC recommends a 50% starting-dose reduction or selection of an alternative antidepressant for poor metabolizers, and consideration of an alternative for ultrarapid metabolizers (in whom subtherapeutic exposures may compromise efficacy).<ref name="cpic-ssri-2023">Bousman CA, Stevenson JM, Ramsey LB, et al. Clinical Pharmacogenetics Implementation Consortium (CPIC) Guideline for CYP2D6, CYP2C19, CYP2B6, SLC6A4, and HTR2A Genotypes and Serotonin Reuptake Inhibitor Antidepressants. ''Clinical Pharmacology and Therapeutics''. 2023 Jul;114(1):51-68. PMID: 37032427.</ref>
{| class="wikitable sortable mw-collapsible mw-collapsed" style="width:100%;"
* '''Voriconazole''': poor metabolizers have substantially higher plasma exposures and an increased risk of hepatotoxicity; ultrarapid metabolizers have subtherapeutic exposures and risk treatment failure. Therapeutic drug monitoring is the usual clinical lever, but CYP2C19 genotype can pre-emptively guide the starting dose.
|+ style="white-space:nowrap; text-align:left;" | near-complete CYP2C19 substrate table (click to expand)
* '''Other substrates of interest''': diazepam (the N-demethylation step), phenytoin (a partial pathway alongside CYP2C9), the tricyclic antidepressants (partial), the antimalarial proguanil (which CYP2C19 activates to cycloguanil).
! Substrate !! Therapeutic class !! CYP2C19 contribution !! Clinical notes
|-
| [[Amitriptyline]] || Tricyclic antidepressant || partial || N-demethylation to nortriptyline is partly CYP2C19; CYP2D6 dominates the hydroxylation step.
|-
| [[Carisoprodol]] || Muscle relaxant || major || PMs have substantially higher exposures and prolonged sedation.
|-
| [[Citalopram]] || SSRI antidepressant || major || '''CPIC SSRI guideline''': CYP2C19 PMs at elevated QT-prolongation risk; 50% starting-dose reduction or alternative agent recommended.
|-
| [[Clobazam]] || Benzodiazepine (antiepileptic) || major || N-demethylation to the active norclobazam metabolite; PMs accumulate norclobazam to higher levels.
|-
| '''[[Clopidogrel]]''' || Antiplatelet (P2Y12 inhibitor prodrug) || major || '''Activation reaction; FDA boxed warning.''' CYP2C19 performs the second activation step. PMs generate substantially less active metabolite, with higher rates of stent thrombosis post-PCI. CPIC strongly recommends prasugrel or ticagrelor instead in PM/IM.
|-
| [[Clomipramine]] || Tricyclic antidepressant || partial || N-demethylation to desmethylclomipramine; mixed CYP2C19 + CYP2D6.
|-
| [[Cyclophosphamide]] || Antineoplastic (alkylating) || partial || Bioactivation route is multi-CYP (CYP2B6 dominant, CYP2C19 and CYP3A4 contributing).
|-
| [[Dexlansoprazole]] || Proton pump inhibitor || major || Same CYP2C19-dependence as lansoprazole.
|-
| [[Diazepam]] || Benzodiazepine || major || N-demethylation to nordiazepam (the long-half-life active metabolite). PMs accumulate diazepam and nordiazepam to higher exposures.
|-
| [[Escitalopram]] || SSRI antidepressant || major || '''CPIC SSRI guideline''': same QT and dose-adjustment caution pattern as citalopram.
|-
| [[Esomeprazole]] || Proton pump inhibitor || major || Same CYP2C19-dependence as omeprazole (esomeprazole is the S-enantiomer of omeprazole).
|-
| [[Imipramine]] || Tricyclic antidepressant || partial || N-demethylation to desipramine.
|-
| [[Indomethacin]] || NSAID || partial || Mixed CYP2C19 + glucuronidation; CYP2C19 minor relative to CYP2C9 in NSAID metabolism generally.
|-
| [[Lansoprazole]] || Proton pump inhibitor || major || CPIC PPI guideline: dose increase in RM/UM; consider dose reduction in PM.
|-
| [[Mephenytoin]] || Antiepileptic (historical) || major || The original probe substrate for the CYP2C19 polymorphism (the "mephenytoin hydroxylase deficiency" phenotype, by which the enzyme was originally characterised in the 1980s).
|-
| [[Moclobemide]] || Reversible MAO-A inhibitor (antidepressant) || major || PMs have higher exposures.
|-
| [[Nelfinavir]] || HIV protease inhibitor || major || PMs have higher exposures.
|-
| '''[[Omeprazole]]''' || Proton pump inhibitor || major || '''Canonical CYP2C19 substrate.''' PMs have higher acid-suppression at standard doses; UMs may underrespond. Also a moderate CYP2C19 self-inhibitor, with the clinical-relevance kink that this attenuates clopidogrel activation.
|-
| [[Pantoprazole]] || Proton pump inhibitor || major || Weaker CYP2C19 inhibitor than omeprazole, so generally preferred when a PPI is co-prescribed with clopidogrel.
|-
| [[Phenobarbital]] || Barbiturate (antiepileptic, sedative) || partial || Mixed CYP2C19 + CYP2C9 + non-CYP routes.
|-
| [[Phenytoin]] || Antiepileptic || partial || Minor CYP2C19 route alongside the dominant CYP2C9 pathway; relevant in CYP2C9 PMs in whom the CYP2C19 contribution becomes proportionally larger.
|-
| [[Proguanil]] || Antimalarial (prodrug) || major || '''Activation reaction.''' CYP2C19 converts proguanil to cycloguanil, the active dihydrofolate-reductase inhibitor. PMs have reduced antimalarial efficacy.
|-
| [[Propranolol]] || Beta blocker || partial || Mixed CYP2C19 + CYP1A2 + CYP2D6 routes.
|-
| [[Rabeprazole]] || Proton pump inhibitor || partial || Less CYP2C19-dependent than other PPIs because it relies more heavily on non-enzymatic reduction; CYP2C19 contribution still real but smaller.
|-
| [[Sertraline]] || SSRI antidepressant || partial || Mixed CYP2C19 + CYP2B6 + CYP2D6 + CYP3A4; less CYP2C19-dependent than citalopram or escitalopram.
|-
| [[Thalidomide]] || Immunomodulator (myeloma, leprosy) || moderate || Mixed CYP2C19 + non-enzymatic hydrolysis.
|-
| [[Voriconazole]] || Triazole antifungal || major || PMs have substantially higher exposures and hepatotoxicity risk; UMs have subtherapeutic exposures and treatment-failure risk. Therapeutic drug monitoring is standard, but CYP2C19 genotype can guide the starting dose.
|-
| [[Warfarin]] || Anticoagulant || minor || R-warfarin is a minor CYP2C19 substrate; the clinically dominant CYP2C9-mediated metabolism of S-warfarin overshadows it.
|}


== Phenotype categories ==
== Phenotype categories ==
The harmonized CPIC + DPWG phenotype-translation table for CYP2C19 distinguishes five categories rather than the four used for CYP2D6, reflecting the importance of the gain-of-function ''*17'' allele.<ref name="cpic-clopidogrel-2022" />
The harmonized CPIC + DPWG phenotype-translation table for CYP2C19 distinguishes five categories rather than the four used for CYP2D6, reflecting the importance of the gain-of-function ''*17'' allele.<ref name="cpic-clopidogrel-2022">Lee CR, Luzum JA, Sangkuhl K, et al. Clinical Pharmacogenetics Implementation Consortium Guideline for CYP2C19 Genotype and Clopidogrel Therapy: 2022 Update. ''Clinical Pharmacology and Therapeutics''. 2022 Nov;112(5):959-967. PMID: 35034351.</ref>


{| class="wikitable"
{| class="wikitable"
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For any medicine that depends materially on CYP2C19 for activation or clearance:
For any medicine that depends materially on CYP2C19 for activation or clearance:


* '''Known PM phenotype''': avoid prodrugs that require CYP2C19 activation ([[Clopidogrel|clopidogrel]] should be replaced with prasugrel or ticagrelor in the post-PCI setting). Reduce starting dose by 50% for CYP2C19-cleared agents prone to exposure-related toxicity (citalopram, escitalopram). Consider therapeutic drug monitoring for voriconazole.<ref name="cpic-clopidogrel-2022" /><ref name="cpic-ssri-2023" />
* '''Known PM phenotype''': avoid prodrugs that require CYP2C19 activation ([[Clopidogrel|clopidogrel]] should be replaced with prasugrel or ticagrelor in the post-PCI setting). Reduce starting dose by 50% for CYP2C19-cleared agents prone to exposure-related toxicity (citalopram, escitalopram). Consider therapeutic drug monitoring for voriconazole.<ref name="cpic-clopidogrel-2022" /><ref name="cpic-ssri-2023">Bousman CA, Stevenson JM, Ramsey LB, et al. Clinical Pharmacogenetics Implementation Consortium (CPIC) Guideline for CYP2D6, CYP2C19, CYP2B6, SLC6A4, and HTR2A Genotypes and Serotonin Reuptake Inhibitor Antidepressants. ''Clinical Pharmacology and Therapeutics''. 2023 Jul;114(1):51-68. PMID: 37032427.</ref>
* '''Known UM phenotype''': anticipate undertreatment with prodrugs activated by other CYPs (less of a concern for clopidogrel itself, since UM amplifies activation), and with substrates whose clinical effect depends on exposure (PPIs may underwork; voriconazole levels may be subtherapeutic; some SSRIs may be ineffective). CPIC recommends dose increases for PPIs and alternative-agent consideration for SSRIs in this phenotype.<ref name="cpic-ppi-2021" /><ref name="cpic-ssri-2023" />
* '''Known UM phenotype''': anticipate undertreatment with prodrugs activated by other CYPs (less of a concern for clopidogrel itself, since UM amplifies activation), and with substrates whose clinical effect depends on exposure (PPIs may underwork; voriconazole levels may be subtherapeutic; some SSRIs may be ineffective). CPIC recommends dose increases for PPIs and alternative-agent consideration for SSRIs in this phenotype.<ref name="cpic-ppi-2021">Lima JJ, Thomas CD, Barbarino J, et al. Clinical Pharmacogenetics Implementation Consortium (CPIC) Guideline for CYP2C19 and Proton Pump Inhibitor Dosing. ''Clinical Pharmacology and Therapeutics''. 2021 Jun;109(6):1417-1423. PMID: 32770672.</ref><ref name="cpic-ssri-2023" />
* '''Standard genotype + strong CYP2C19 inhibitor co-prescribed''' (especially fluvoxamine, fluoxetine, or omeprazole): treat as phenocopy intermediate or poor metabolizer for the duration of the inhibitor's effect. Watch the clopidogrel co-prescription specifically; switch to pantoprazole or H2-blocker if a PPI is needed.
* '''Standard genotype + strong CYP2C19 inhibitor co-prescribed''' (especially fluvoxamine, fluoxetine, or omeprazole): treat as phenocopy intermediate or poor metabolizer for the duration of the inhibitor's effect. Watch the clopidogrel co-prescription specifically; switch to pantoprazole or H2-blocker if a PPI is needed.
* '''Pre-prescription genotyping''': increasingly routine before clopidogrel initiation in cardiology, especially in health systems serving populations with high PM frequency. Less routine for the PPI and SSRI indications, where alternatives are inexpensive and therapeutic-drug-monitoring substitutes are available.
* '''Pre-prescription genotyping''': increasingly routine before clopidogrel initiation in cardiology, especially in health systems serving populations with high PM frequency. Less routine for the PPI and SSRI indications, where alternatives are inexpensive and therapeutic-drug-monitoring substitutes are available.
== Comprehensive substrate and interaction tables ==
The substrate and interaction tables on this page are curated for clinical relevance, not for completeness. Three authoritative external resources maintain comprehensive lists of CYP2C19 substrates, inhibitors, and inducers, and the wiki recommends them to any reader who needs an exhaustive look-up:
* '''Flockhart Cytochrome P450 Drug Interaction Table''', maintained by the Department of Medicine at Indiana University School of Medicine. The most widely cited clinical-reference cytochrome P450 table; substrate-, inhibitor-, and inducer-tiered, updated regularly. Available at https://drug-interactions.medicine.iu.edu/.
* '''U.S. Food and Drug Administration Drug Development and Drug Interactions Table''', the regulatory-grade list FDA uses for labeling and clinical-trial design decisions. Smaller than Flockhart but every entry is FDA-vetted. Available via the FDA Center for Drug Evaluation and Research clinical drug interaction page.
* '''PharmGKB''', the pharmacogenomics knowledge base hosted at Stanford University; the CYP2C19 gene page indexes substrate-, inhibitor-, and inducer-relationships with their underlying primary literature, and links each gene-drug pair to the CPIC dosing guideline where one exists.<ref name="pharmgkb2021">Whirl-Carrillo M, Huddart R, Gong L, Sangkuhl K, Thorn CF, Whaley R, Klein TE. An Evidence-Based Framework for Evaluating Pharmacogenomics Knowledge for Personalized Medicine. ''Clinical Pharmacology and Therapeutics''. 2021 Sep;110(3):563-572. PMID: 34216021.</ref> Available at https://www.pharmgkb.org/.
For a comprehensive review of CYP2C19 (and the rest of the human cytochrome P450 family) covering regulation, polymorphism, and substrate spectrum in detail, the Zanger and Schwab 2013 review in ''Pharmacology and Therapeutics'' remains the standard reference.<ref name="zanger2013" />


== See also ==
== See also ==